Does it just "run" and take over the screen immediately, or does it bind to the Hijack menu like the other apps? If the latter, no problem, I'd only run it in car-mode anyway.
I know it's somewhat arguable as to how much memory is wasted by starting your applications on every boot, even if it is "only in car-mode". However, if you have a bunch of applications installed (say GPS App, telnetd, pacman, emptriv, emptris, etc.) then the amount of memory you are stealing from the player to use for caching becomes more significant, especially if you only regularly use, say, GPSApp.
That's why I think the launcher thing is a good idea for now at least (Mark has mentioned that when he gets some free time he's going to make another easier to use version that's similar to EXEC but where it runs on a menu click, say MENU_EXEC, or something.)
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1998 BMW ///M3
30 GB Mk2a, Tuner,
and 10 GB backup